
This hearty pasta bake with pumpkin tomato sauce combines the comforting warmth of baked pasta with fall's signature vegetable. The creamy pumpkin sauce, earthy mushrooms, and vibrant spinach create a nutritional powerhouse disguised as a crowd-pleasing comfort dish.
I developed this recipe during a particularly chilly autumn weekend when I craved something comforting yet nutritious. It quickly became my go to dish for dinner parties where I need to accommodate vegetarians while still impressing meat eaters.
Ingredients
- 1 lb dry pasta: Such as mezzi rigatoni, shells, or ziti. The tubular shapes capture sauce perfectly inside each bite.
- 2 Tbsp butter: Creates a nutty flavor base for the walnut sage topping.
- 1/2 cup finely chopped walnuts: Adds crucial textural contrast and protein.
- Fresh sage leaves: Provides earthy aromatic flavor that pairs beautifully with pumpkin.
- Extra virgin olive oil: Use a good quality oil as its flavor will come through.
- 8 oz cremini mushrooms: Their meaty texture and umami depth make this dish satisfying.
- Yellow onion: Forms the aromatic foundation of any good sauce.
- Tomato paste: Concentrated flavor that balances the sweetness of pumpkin.
- Garlic cloves: Fresh is essential for proper pungency.
- Crushed red pepper flakes: Adds gentle heat that cuts through the richness.
- Fresh baby spinach: Tender leaves melt into the sauce adding nutrition.
- Dried oregano: Herbaceous notes that complement the tomato components.
- Vegetable broth: Choose low sodium to control salt levels yourself.
- Pumpkin purée: Use 100% pure canned pumpkin, not pumpkin pie filling.
- Parmesan and fontina cheese: The fontina melts beautifully while Parmesan adds savory depth.
Step-by-Step Instructions
- Prepare the Pasta:
- Cook pasta 2 minutes shy of al dente timing as it will continue cooking in the oven. The pasta should have a definite firmness when you bite through but not be crunchy or raw in the center. Drain thoroughly but do not rinse to maintain the starchy exterior that helps sauce adhere.
- Create the Walnut Sage Topping:
- Melt butter in a large pan until it begins to foam but not brown. Add walnuts and sage then cook with frequent stirring for a full 5 minutes. This extended cooking time allows the walnuts to develop a deeper toasty flavor while the sage becomes crisp and intensely aromatic. The mixture should smell nutty and fragrant when done.
- Build the Vegetable Base:
- Using the same pan without washing it lets you capture all the previous flavors. Sauté mushrooms and onions patiently for 8 minutes. They should significantly reduce in size and the mushrooms should release and then reabsorb their moisture for maximum flavor concentration.
- Develop the Sauce Complexity:
- Add tomato paste and cook until it darkens to brick red, approximately 3 to 4 minutes. This caramelization process is crucial as it transforms the sharp acidic notes into sweet complex flavors. Incorporate spinach gradually, allowing each handful to wilt before adding more.
- Create the Creamy Pumpkin Sauce:
- Pour in broth while scraping the pan bottom to incorporate all browned bits. The sauce should loosen significantly before adding pumpkin purée and cheeses. Stir continuously until cheese is fully melted and sauce achieves a silky smooth consistency with no graininess.
- Bake to Perfection:
- Transfer to your baking dish then top with remaining cheese and walnut mixture. The initial covered baking period allows flavors to meld without excessive browning while the final uncovered minutes create that desirable golden cheese top. Look for bubbling edges as a sign of doneness.

The fontina cheese is truly the secret hero of this dish. I discovered its melting properties after countless failed attempts with mozzarella which separated and became stringy. Fontina maintains a creamy consistency even when cooled slightly giving this pasta bake its luxurious mouthfeel that keeps everyone coming back for seconds.
Make It Ahead
This pasta bake is perfect for meal prep. Prepare everything up to the baking step then cover tightly and refrigerate for up to 48 hours. When ready to serve, simply add an extra 10 minutes to the covered baking time since you're starting with a cold dish. The flavors actually develop beautifully during the rest period making this possibly even better when made ahead.
Smart Substitutions
Cannot find fontina? Gruyère or even a good quality low moisture mozzarella mixed with provolone can work in its place. For a dairy free version, substitute cashew cream for the cheese and increase nutritional yeast for that savory flavor. The pumpkin purée can be replaced with butternut squash purée with nearly identical results, especially if your family isn't fond of pumpkin's distinctive taste.
Serving Suggestions
Serve this pasta bake with a simple arugula salad dressed with lemon juice and olive oil. The peppery greens and bright acidity perfectly complement the rich pasta. For a complete autumn meal, pair with roasted Brussels sprouts or a glass of medium-bodied white wine like Viognier or unoaked Chardonnay. A sprinkle of extra fresh sage leaves just before serving adds visual appeal and aromatic punch.
Seasonal Adaptations
This recipe follows nature's rhythm. In summer, replace pumpkin with roasted red peppers for a brighter flavor profile. Spring calls for the addition of fresh peas and asparagus tips. Winter allows for heartier additions like roasted butternut squash cubes mixed throughout. The base recipe remains your faithful template while seasonal produce determines the final character.

Frequently Asked Questions
- → Can I use a different type of pasta?
Yes, you can use any tubular or short pasta, like rigatoni, ziti, or shells, as they hold the sauce well. Avoid long pasta like spaghetti.
- → Is this dish freezer-friendly?
Yes, you can freeze the baked pasta in an airtight container for up to 3 months. Thaw overnight in the refrigerator before reheating.
- → What cheese can I substitute for fontina?
Gruyere or gouda work well as substitutes for fontina. Both will provide a creamy texture and rich flavor.
- → Can I make this dish vegan?
Yes, substitute the butter with vegan butter, use plant-based cheeses, and ensure the pasta is egg-free. The dish will still be deliciously savory.
- → How can I reheat leftovers?
To reheat, use the microwave with a splash of broth, or warm in a 350ºF oven until heated through. This prevents the pasta from drying out.
- → Can I add protein to this dish?
Absolutely! Consider adding cooked chicken, turkey sausage, or chickpeas for an extra protein boost.